PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0407551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 124aa MW: 13919.3 Da PI: 9.1213 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 106 | 2.3e-33 | 10 | 89 | 18 | 96 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 h+lPlar+k+i+k++ kmis+e+P+l+skacelfi+eltlr+wl+ae +krrtl+k+dia+a+ + + ++fl iv RcHm_v2.0_Chr4g0407551 10 CHQLPLARVKRIMKSNGVAKMISSETPILFSKACELFIMELTLRAWLQAEVSKRRTLQKCDIAKAIRNDQlLHNFLAPIV 89 69****************************************************************98762567887665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence |
MHVKTVSRSC HQLPLARVKR IMKSNGVAKM ISSETPILFS KACELFIMEL TLRAWLQAEV 60 SKRRTLQKCD IAKAIRNDQL LHNFLAPIVF CTLHDHEGEN KNEVEILGDP SSMSSAPGFP 120 SKVC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-30 | NF-YC family protein |