PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0405981
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 466aa    MW: 54028.2 Da    PI: 7.6172
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0405981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.6e-2138120290
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                             fY++YAke GF+v+  +s+k+  ng i+++ +vCsk+g+++ + kk     r+r+ tr++Cka+++v ++   gk++vt +++ H+H
  RcHm_v2.0_Chr4g0405981  38 FYKSYAKESGFDVKSFTSEKK--NGVIVRKAYVCSKQGTSKVTGKK-----RNRNRTRVNCKARIVVARRAtIGKYVVTIFDEGHSH 117
                             *************99998887..9****************998888.....999***************9999************** PP

                    FAR1  88 ela 90 
                             +l+
  RcHm_v2.0_Chr4g0405981 118 PLT 120
                             *97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    
MESQQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSFTSEKKNG  60
VIVRKAYVCS KQGTSKVTGK KRNRNRTRVN CKARIVVARR ATIGKYVVTI FDEGHSHPLT  120
TLRRKHLTKI HREVSSIHKS LTKQLTAVNV PTCTQFDFLG VHSGGVENIG CLQQDIYNYK  180
RDCRKEVEGH DGDMLHEYFL LEIEKDPSLI FKIEADNENR ITHIFWADAI SRRSYKFYGD  240
VVIFDTTYNT NMYSLIFAPL VGVNNHGQTI ILACAFLSNE TTDSFVWFFK EFLDAMPGDA  300
PRMIITDQDP AMTKAISEVL PQTFHRYCSW HILNKFSEKI DPGKYTRYYD EFQDCIWNSE  360
NRDEFDARWT SIVVSSGLSD NGWLKTMYDI RSTWVPAYVN HIFSAGMSSS QRAESGHAFY  420
KRFVSKENTL LDFMLQFNRA VTRQRHMELM EDNVDINEKP NFHSPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186KRNRNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-82FAR1 family protein