PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0405371
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 366aa    MW: 41137.6 Da    PI: 6.9489
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0405371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.6e-1254110155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  RcHm_v2.0_Chr4g0405371  54 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 110
                             57*******************99998898888888********************98 PP

2AP251.23.1e-16153204155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  RcHm_v2.0_Chr4g0405371 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 204
                             89****99**********99966...3.6*************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MAKLSPQNQK TNASNNATTT AAVNNANAAN KTVVTKVKRT RRSVPRDSPP QRSSIYRGVT  60
RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLA  120
TYHKEMNDME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNGPNNDII AQTTNPNVEA  240
KLVGDVIQNP NDQDQTGLGF FHNLAYSPPE EITMTQLPRP TTATSALGLL LQSSKFKEMM  300
EMTTATDSSM TSSSLPELPQ CTFPDDIQTY FDCQDSTSYG DGDGDDAMFS ELNSYIPSMF  360
QCDFTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-87AP2 family protein