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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0405371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 366aa MW: 41137.6 Da PI: 6.9489 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.6 | 2.6e-12 | 54 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g RcHm_v2.0_Chr4g0405371 54 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 110 57*******************99998898888888********************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 153 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g RcHm_v2.0_Chr4g0405371 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 204 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence |
MAKLSPQNQK TNASNNATTT AAVNNANAAN KTVVTKVKRT RRSVPRDSPP QRSSIYRGVT 60 RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLA 120 TYHKEMNDME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL 180 YLGTYATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNGPNNDII AQTTNPNVEA 240 KLVGDVIQNP NDQDQTGLGF FHNLAYSPPE EITMTQLPRP TTATSALGLL LQSSKFKEMM 300 EMTTATDSSM TSSSLPELPQ CTFPDDIQTY FDCQDSTSYG DGDGDDAMFS ELNSYIPSMF 360 QCDFTV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 4e-87 | AP2 family protein |