PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0403391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 150aa MW: 16819.7 Da PI: 9.067 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.5 | 1.7e-11 | 31 | 86 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql++L+ l++ + ++++e+ +l ++++++V++WFqN +a+e++ RcHm_v2.0_Chr4g0403391 31 NRWAPTPPQLRILKGLYYDKG---FKQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 86 7*****************986...588888888888889******************97 PP | |||||||
2 | Wus_type_Homeobox | 78.3 | 1.1e-25 | 29 | 86 | 2 | 63 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 +++RW+Ptp Q++iL+ ly+ +G ++iq+i +L++yG+iedkNVf+WFQN kaRerq RcHm_v2.0_Chr4g0403391 29 TNNRWAPTPPQLRILKGLYYdKGF-----KQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQ 86 679***************985776.....69*******************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence |
MEQQTQQQIE DGGNNQAAGS SANTPIRPTN NRWAPTPPQL RILKGLYYDK GFKQIQEICL 60 HLKQYGQIED KNVFFWFQNL KARERQLMRP IRKVRVGGSL DLNFGSTSST DDGRSIDLNF 120 GSTGSTSTDR SIDLNFGSRV GYGVDGSIME |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 5e-19 | WOX family protein |