PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0396001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 266aa    MW: 30695.5 Da    PI: 8.8917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0396001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-192269148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  RcHm_v2.0_Chr4g0396001 22 KGPWTSEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                            79********************************************97 PP
2Myb_DNA-binding51.81.9e-1675119147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  RcHm_v2.0_Chr4g0396001  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                             7888******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MYCGTMAAHM GWGIIEEEGW RKGPWTSEED RLLIEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKVPSDA SEKAKTRLLR RQQFHHQQQQ QQQLQLINQA DMKRIMALLD ENDTKISSWP  180
PQAAQGKQDV DTSTIAYPNH TSTEEQGFFY SMLNGNVPHV AEASSSEDSF LWDGLWNLDD  240
VHVNFTTSAC ATGKASTFHN FVVPFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-90MYB family protein