PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0392981
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 256aa    MW: 28916.2 Da    PI: 4.8192
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0392981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WTteEd++l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl
  RcHm_v2.0_Chr4g0392981 14 KGPWTTEEDQILISYIQNYGHGNWRALPKHAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding51.91.7e-1667112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  RcHm_v2.0_Chr4g0392981  67 RGNFTREEEDAIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                             89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MVRAPCCEKM GLKKGPWTTE EDQILISYIQ NYGHGNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEDAIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLLKHN  120
NTTSPTCSTS NLTSRYAEPG DVNFESPTSH ASMSPQPSSS DDFSSVTEAS AATGQNMIKD  180
EKIELDATFL EIDDSFWSEA LSADNSGDNQ LEFLEGTNDQ AQLQLLLPSN IDDGMDFWYD  240
LFIKAGYGDT PELPEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-83MYB family protein