PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0389841
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 287aa    MW: 32438.5 Da    PI: 6.6717
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0389841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-101476148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...............TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...............kgRtlkqcksrwqkyl 48
                            +g W++ Ed+ l ++vk++G+g W + ar+ g               ++R++k++++rw++yl
  RcHm_v2.0_Chr4g0389841 14 KGMWSAREDQVLQNYVKKHGPGKWGKTARETGkfliffiftfdiqqcLKRCGKSVRLRWLNYL 76
                            688********************************************9*************97 PP
2Myb_DNA-binding47.44.3e-1582126147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +g+ T++E++l+++ +k+ G++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr4g0389841  82 KGNITEDEEDLIIRMHKLVGNR-WSLIAGRIP-GRTDNEIKNYWNST 126
                             6899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGRNSGFEKE GLKKGMWSAR EDQVLQNYVK KHGPGKWGKT ARETGKFLIF FIFTFDIQQC  60
LKRCGKSVRL RWLNYLRPGI KKGNITEDEE DLIIRMHKLV GNRWSLIAGR IPGRTDNEIK  120
NYWNSTLRKK LAEQKEKESE MSRNEMIKEN LPSPVGDDGN QHLTKCDVVV GGGGGLMCFA  180
SNVNVEEDHQ RRCLGGTSTD TTILSPRVGD GTGGGANNNI EPAGDDLNYN AMTWNDSIMD  240
LNGGQLYMSE FLQTEFSKFW EETDRFLNFE VGGCSTINHE LPNNWDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.17e-51MYB family protein