PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0496521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 159aa MW: 17737.3 Da PI: 9.2357 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.3e-08 | 118 | 145 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r rWT+eE+ ++++a k++ W++I + RcHm_v2.0_Chr3g0496521 118 RERWTEEEHNKFLEALKLHVQA-WRKIQA 145 78******************99.***986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence |
MLLRLDGLDK KKFDGSRPSA TFSIGLRRVP ISCDVRFQPC IDIHKEQRQS RGGRGQLCLV 60 GGLMASLAMA PVQDDDDDQY GEISFSPAAV GVQLKDQLSS GNDYAPKVRK PYTITKQRER 120 WTEEEHNKFL EALKLHVQAW RKIQATPTPS PSPIAPPPP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 5e-23 | MYB_related family protein |