PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0495721

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 342aa MW: 38031.3 Da PI: 7.6045

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0495721	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W+++++ g+ R+ k+c++rw +yl RcHm_v2.0_Chr3g0495721 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.7	1.5e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l RcHm_v2.0_Chr3g0495721 67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGRPPCCEKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PANTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKIQ 120 SAVDHHQQQQ PQAQNNILGS SISDSTTSNS THHQYPHRNN VNDITSHAST TTLSLRSINQ 180 SSSSSSGGIY ASSTENISRL LEGWMRTSPK STYANLVTKP SHDREENPKG GQDQDEGCDH 240 DLLSHEAFQS ILSFDNLNNV NAASWDRSST TNCDSSSIKQ VSQTQCSTAA AIANEKDKHI 300 IRACESTNTP PLSFLEKWLL DESAAGQVLE DRMMELSPIS LV

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGRPPCCEKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PANTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKIQ  120
SAVDHHQQQQ PQAQNNILGS SISDSTTSNS THHQYPHRNN VNDITSHAST TTLSLRSINQ  180
SSSSSSGGIY ASSTENISRL LEGWMRTSPK STYANLVTKP SHDREENPKG GQDQDEGCDH  240
DLLSHEAFQS ILSFDNLNNV NAASWDRSST TNCDSSSIKQ VSQTQCSTAA AIANEKDKHI  300
IRACESTNTP PLSFLEKWLL DESAAGQVLE DRMMELSPIS LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	5e-96	MYB family protein