PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0491041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 27558 Da PI: 7.1654 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.1 | 5.2e-17 | 106 | 214 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkv 68 kfY+ Y++ +GFs+rk+++ + r++ +++r++vCsk+g+++ + kk +++ r + +r+gC a + + RcHm_v2.0_Chr3g0491041 106 KFYHLYSRVIGFSTRKDRKVRAYRSEFVIRREWVCSKQGEATINAKKqglkekgktliqaekkkmkRNQCPRGKRYSRVGCMAGFGI 192 6*****************************************999999***********998766555556688999********** PP FAR1 69 kkek.dgkwevtkleleHnHel 89 + k ++k+ v+k+ ++HnH++ RcHm_v2.0_Chr3g0491041 193 RYCKeRKKYFVSKFITNHNHDV 214 **999***************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MENNEGGVCY TDHLYHSSFP SDEEVSDDDG LLQIGEDEEG FFCDGGEKGL GHTSEIGNDK 60 CHLMDMETLD GTNVSGCGDL NGKDNSNLYM DDMKDVVFSS VCEAEKFYHL YSRVIGFSTR 120 KDRKVRAYRS EFVIRREWVC SKQGEATINA KKQGLKEKGK TLIQAEKKKM KRNQCPRGKR 180 YSRVGCMAGF GIRYCKERKK YFVSKFITNH NHDVAVSEEV QFLRSHRGVT DSVIAQVEAL 240 QKA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-15 | FAR1 family protein |