PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0488811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 469aa MW: 51708.4 Da PI: 6.3966

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0488811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W++I ++g +t+ q++s+ qk+ RcHm_v2.0_Chr3g0488811 55 RERWTEEEHNKFLEALKLHGRA-WRKIQDHVG-SKTAVQIRSHAQKF 99 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MASPAMAPVQ DDDDDQYGEI SFSPAAVGVQ LKDHLSSGND YAPKVRKPYT ITKQRERWTE 60 EEHNKFLEAL KLHGRAWRKI QDHVGSKTAV QIRSHAQKFF SKVARDPDGI NTSSADPIDI 120 PPPRPKRKPM RPYPRKHVHP LHTETSNLEQ PIRSAPKKLS VSDLENQSPT SVLSPMGSDT 180 IGSSDSSTPS GSLSPVSLVA GVQNEAINHS EQQPSPEDSR TSLSAVAEDG PLPDKKFSVK 240 LELFPTDNVY DSGGSADEAS ARSLKLFGRT VLVTDSHRPL SGGTCKSISY DTQEEKCGQT 300 SIPCNFMPIQ CAFGNVEHVW NENWNRSGSS NLIPWCTLGA DSSVPFLPFS NQQTMKSYFD 360 CNLEDPHNQD VQKESSWNGS DAGSVSDEEN GGKCLDVEMH GDLQISEKEK VEEPNSVFQF 420 KASKNSAFSK LKPEKCKKGF VPYKRCMVDA DARSSTSGQD RDQKRVHLC

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MASPAMAPVQ DDDDDQYGEI SFSPAAVGVQ LKDHLSSGND YAPKVRKPYT ITKQRERWTE  60
EEHNKFLEAL KLHGRAWRKI QDHVGSKTAV QIRSHAQKFF SKVARDPDGI NTSSADPIDI  120
PPPRPKRKPM RPYPRKHVHP LHTETSNLEQ PIRSAPKKLS VSDLENQSPT SVLSPMGSDT  180
IGSSDSSTPS GSLSPVSLVA GVQNEAINHS EQQPSPEDSR TSLSAVAEDG PLPDKKFSVK  240
LELFPTDNVY DSGGSADEAS ARSLKLFGRT VLVTDSHRPL SGGTCKSISY DTQEEKCGQT  300
SIPCNFMPIQ CAFGNVEHVW NENWNRSGSS NLIPWCTLGA DSSVPFLPFS NQQTMKSYFD  360
CNLEDPHNQD VQKESSWNGS DAGSVSDEEN GGKCLDVEMH GDLQISEKEK VEEPNSVFQF  420
KASKNSAFSK LKPEKCKKGF VPYKRCMVDA DARSSTSGQD RDQKRVHLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-56	MYB_related family protein