PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0486991

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 432aa MW: 48959.9 Da PI: 9.9121

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0486991	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	7.6e-08	130	171	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l d+++q+ + + Ia +++ Rt +++k+r+++ RcHm_v2.0_Chr3g0486991 130 WTKEETDQLFDLCQQFDLR-FIVIADRFPSSRTVEELKDRYYS 171 *****************.*******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MDAKDILGLP KTTHPLSQEK KSRPPKESQR KPDGISREVY ALIGGVPPLM PAIEPSQLKK 60 RPPSDEKITW QWLPFTNSAR KDDLQLYHWV RVVNGAPPTG DYSFAKYNKS VDIIKYTDEE 120 YDKYLTDPIW TKEETDQLFD LCQQFDLRFI VIADRFPSSR TVEELKDRYY SVSRHILIAR 180 AASPADVSGH PLVKEPYKVT QEKERKRALS MVLSQTKNQE RKDAEVLAEA KRIAESRARM 240 VARSARELEL PVTFNDERGI VPGESISPLS STVAPSTSMD NTSTLGTLRL LRVYLRTYAL 300 DQMIIAASSS AGLRTIKRVE QSLQELGVNL KPRVPTKAVC SEHLELRKEI LTLLNLQKEL 360 QYKEADGSSY RDSTYETPGT PKDRTFVPDS MMFGGERVVK RDQKRKGPGR VSEAPSSPAQ 420 SKRPRKLKAT DL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MDAKDILGLP KTTHPLSQEK KSRPPKESQR KPDGISREVY ALIGGVPPLM PAIEPSQLKK  60
RPPSDEKITW QWLPFTNSAR KDDLQLYHWV RVVNGAPPTG DYSFAKYNKS VDIIKYTDEE  120
YDKYLTDPIW TKEETDQLFD LCQQFDLRFI VIADRFPSSR TVEELKDRYY SVSRHILIAR  180
AASPADVSGH PLVKEPYKVT QEKERKRALS MVLSQTKNQE RKDAEVLAEA KRIAESRARM  240
VARSARELEL PVTFNDERGI VPGESISPLS STVAPSTSMD NTSTLGTLRL LRVYLRTYAL  300
DQMIIAASSS AGLRTIKRVE QSLQELGVNL KPRVPTKAVC SEHLELRKEI LTLLNLQKEL  360
QYKEADGSSY RDSTYETPGT PKDRTFVPDS MMFGGERVVK RDQKRKGPGR VSEAPSSPAQ  420
SKRPRKLKAT DL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	399	405	VKRDQKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein