PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0486901
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 305aa    MW: 34766.2 Da    PI: 4.6146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0486901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-163077148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEd +l ++++ +G g+W++ a   g++R++k+c++rw++yl
  RcHm_v2.0_Chr3g0486901 30 KGPWTVEEDSILMEYINTHGEGRWNSLAGNSGLKRSGKSCRLRWLNYL 77
                            79********************************************97 PP
2Myb_DNA-binding482.9e-1583126146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  RcHm_v2.0_Chr3g0486901  83 RGNITLQEQLLILQLHSRWGNR-WSKIAEYLP-GRTDNEIKNYWRT 126
                             7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MDVDQYLLRG YTSSVTHELP SCDPEDDLRK GPWTVEEDSI LMEYINTHGE GRWNSLAGNS  60
GLKRSGKSCR LRWLNYLRPN VRRGNITLQE QLLILQLHSR WGNRWSKIAE YLPGRTDNEI  120
KNYWRTRVQK QAKQLNCDVN SKQFQDAMRY VWIPRLMERI RASSDSTVLS GQPTETATST  180
AFTPPDDYCL TDHSNTAAAG SSHYWIDPNY LPEASATSSG STELQDWLNI PEPTSTELSE  240
LNCYPMNGQY YSSTNGSGCY QDGSEIQGSD HIESSNSWST PGGDLVENLW NEENIWFLQQ  300
QLNSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-75MYB family protein