PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0485421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 28852.6 Da PI: 6.4183 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 20 | 44 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 W+tIa+ ++ +Rt++++k++w+++l RcHm_v2.0_Chr3g0485421 20 LWSTIAAQLP-KRTDNEIKNYWNTHL 44 5*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MVCFSLPYLR ELLHILCNIL WSTIAAQLPK RTDNEIKNYW NTHLKKRLAK IGFDPVTHKP 60 KTAILASADG GDPKKLSNLS HIAQWETARL QAEARFSRQS KLLISHDQPP RFGPVPAPQC 120 LDMNERAREI RLLLKSILAA DSGAQLGGGI GSTATHVGQE VGSFGKVDVE GLLTNCDQFE 180 APRTSTSVLG FDEVFGESGT NNDYGELLEA LLQHNHNNTG FEVGDTWTLE QRETVMMSEP 240 GTTYIWNNNN YNVLTGHPSG I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 3e-33 | MYB family protein |