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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0482661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 425aa MW: 46895.3 Da PI: 8.7163 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 74 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g RcHm_v2.0_Chr3g0482661 74 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 133 57*******************766644468557*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence |
MASSSSDPGP KTESGSGSGG GAEASEAAAA AAAAVATDQQ LLYRGLKKAK KERGCTAKER 60 ISKMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA 120 ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNVSREEY LASLRRKSSG FSRGMSKYRA 180 LSSRWEPSFG RMGGSEYFNS IHYGTGDDPA TDNEFLGTFC IERKIDVTSY IKWWGPNKTR 240 QADSMIKSSE EAKHGFAGDS GGELKTLEWE SQPTEPYQMP RLGVCHEGKK QNGARVSAMS 300 ILSRSPAYKS LQEKASIKQE KNADNDENEN KNTIHKKDYG KAIEKSTSHD AGDERLNASL 360 GMSGGLSLQR NAFPLAPFLS APLLTNYNMI DPLVDPILWT SLAPVLPEVT KTETSASYSL 420 FRPEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-153 | AP2 family protein |