PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0482661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 425aa    MW: 46895.3 Da    PI: 8.7163
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0482661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1774133155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  RcHm_v2.0_Chr3g0482661  74 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 133
                             57*******************766644468557*************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MASSSSDPGP KTESGSGSGG GAEASEAAAA AAAAVATDQQ LLYRGLKKAK KERGCTAKER  60
ISKMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA  120
ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNVSREEY LASLRRKSSG FSRGMSKYRA  180
LSSRWEPSFG RMGGSEYFNS IHYGTGDDPA TDNEFLGTFC IERKIDVTSY IKWWGPNKTR  240
QADSMIKSSE EAKHGFAGDS GGELKTLEWE SQPTEPYQMP RLGVCHEGKK QNGARVSAMS  300
ILSRSPAYKS LQEKASIKQE KNADNDENEN KNTIHKKDYG KAIEKSTSHD AGDERLNASL  360
GMSGGLSLQR NAFPLAPFLS APLLTNYNMI DPLVDPILWT SLAPVLPEVT KTETSASYSL  420
FRPEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-153AP2 family protein