PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0481261

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 1025aa MW: 114969 Da PI: 5.7595

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0481261	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	962	1016	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 + +WT eE+e l+++v+++ + Wk I + gRt+ ++k++w++ RcHm_v2.0_Chr3g0481261 962 KVPWTVEEEEMLKKGVQEFQCNdetrmPWKQIFEFGSevflSGRTPTDLKDKWRN 1016 579***************99******9877799999**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence
MEDMSEDQKA IAWLWVVEGL ATMKQVDVSL LTDLLGEIGS ALPDHMSKNA RERVALRCLE 60 ELFGSSNNGM NGQVPSAHNS KVSFDLSQSC ETVLKRITDE TPEFDLRNAG PALLKWDIHS 120 FIVHKKAALP KCALKQLKVS ILDGSHPHAD VLRGKSSLTM TSDADRVSVN ESNQSLNKSC 180 YSAQNMGVEG NSENENLLPS ERDRIGSDNE KRERVNDSDD WHIEAKKMKW DASYVSQSIE 240 LEQNQIPLDG RECLQDTSER HVPVSVSERC DVAENQMAME QNRVEDGHSD YAASKRYGQS 300 SDDAIHKDQR ENHSNPTSVP RDTFQDKGHQ YTCVAEAKDD GGLHCKLRVS NVDPLGETQH 360 KISTKGFSCN SEHDAHIRVP LPSSTDESQK LSNADEGNGW DPGNMAGENL KRVNCSDDFH 420 IRAKRREWDA YYVLQSIEQN QLPLYSEDSS ERDVPVSESL RCDLAENQME MMEEIRALED 480 GHDDYTESKK NGQSTYDATH HSQLENCCNA TSMHQDTIQD EARQHTCVNK TKDDDGLQLE 540 LRASGVAAPD ESQHTVSTKV FSDNTANDFH IKVLHPATTD GPQWKSLANN KHKHCSKPSS 600 SGVGSLNETQ QKNSTQQSDC VSEHDSHIKV SYPAYIDGSQ QKNIADKSKE LMDFLCESDT 660 SNESDGFHDK KIDAAMKKHA FLRSQCTSSH DSLVTTVTEK NRSLYCNEGG QLLTCKTSNC 720 PVVVHENWLR SSAISFEKGN FYCPFCLYVL ALTDYLEARK QTSLLKTGLN AFVHANLENR 780 PMEPVGKVHS KVNNCSRHLE DILLGKPYQN RHLEEREENQ GNQCEEHVNE VDDVQFHNII 840 YDKQQGLPSS SCTDIKSMRG KVHVPAGEKE GKEKAVHECV SAGLDRFQSQ VLEGDHLSSK 900 NIQSLLGDHF SSKNTQSLLV GQGQAGAVEV VQQHITDYSL RKRSKSLCTC TQLATTQSRK 960 KKVPWTVEEE EMLKKGVQEF QCNDETRMPW KQIFEFGSEV FLSGRTPTDL KDKWRNICKG 1020 SLKSK

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence

MEDMSEDQKA IAWLWVVEGL ATMKQVDVSL LTDLLGEIGS ALPDHMSKNA RERVALRCLE  60
ELFGSSNNGM NGQVPSAHNS KVSFDLSQSC ETVLKRITDE TPEFDLRNAG PALLKWDIHS  120
FIVHKKAALP KCALKQLKVS ILDGSHPHAD VLRGKSSLTM TSDADRVSVN ESNQSLNKSC  180
YSAQNMGVEG NSENENLLPS ERDRIGSDNE KRERVNDSDD WHIEAKKMKW DASYVSQSIE  240
LEQNQIPLDG RECLQDTSER HVPVSVSERC DVAENQMAME QNRVEDGHSD YAASKRYGQS  300
SDDAIHKDQR ENHSNPTSVP RDTFQDKGHQ YTCVAEAKDD GGLHCKLRVS NVDPLGETQH  360
KISTKGFSCN SEHDAHIRVP LPSSTDESQK LSNADEGNGW DPGNMAGENL KRVNCSDDFH  420
IRAKRREWDA YYVLQSIEQN QLPLYSEDSS ERDVPVSESL RCDLAENQME MMEEIRALED  480
GHDDYTESKK NGQSTYDATH HSQLENCCNA TSMHQDTIQD EARQHTCVNK TKDDDGLQLE  540
LRASGVAAPD ESQHTVSTKV FSDNTANDFH IKVLHPATTD GPQWKSLANN KHKHCSKPSS  600
SGVGSLNETQ QKNSTQQSDC VSEHDSHIKV SYPAYIDGSQ QKNIADKSKE LMDFLCESDT  660
SNESDGFHDK KIDAAMKKHA FLRSQCTSSH DSLVTTVTEK NRSLYCNEGG QLLTCKTSNC  720
PVVVHENWLR SSAISFEKGN FYCPFCLYVL ALTDYLEARK QTSLLKTGLN AFVHANLENR  780
PMEPVGKVHS KVNNCSRHLE DILLGKPYQN RHLEEREENQ GNQCEEHVNE VDDVQFHNII  840
YDKQQGLPSS SCTDIKSMRG KVHVPAGEKE GKEKAVHECV SAGLDRFQSQ VLEGDHLSSK  900
NIQSLLGDHF SSKNTQSLLV GQGQAGAVEV VQQHITDYSL RKRSKSLCTC TQLATTQSRK  960
KKVPWTVEEE EMLKKGVQEF QCNDETRMPW KQIFEFGSEV FLSGRTPTDL KDKWRNICKG  1020
SLKSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	941	962	RKRSKSLCTCTQLATTQSRKKK