PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0480751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 358aa    MW: 39368.2 Da    PI: 6.242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0480751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08202249455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  RcHm_v2.0_Chr3g0480751 202 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 249
                             8*************************9....888999999999999999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MDPTAGNVPG SAVPGPDHEE PGLETLQFRE EIQRLMTVPP DNASSFTALL ELPPTQAMEL  60
LHLSPESEPN PAPAAVSGKP PLLEPCAHPF NSSLTFPSNA ALIERAAKFS IFGGGEQSPE  120
TGAVPSNPGV NLEKVKSEPA ESDSNPNSSQ ETKNNQRSSA KRKEREKKVK VSMKKSKIEA  180
KEDADKIPYV HVRARRGQAT DSHSLAERAR REKINARMKL LQELVPGCNK ISGTALVLDE  240
IINHVQSLQR QVEFLSMRLA TVDPRIDSNL DHLLATESLS LMQSNFSNMT PPIMWPELPI  300
NGNRQQYQQQ WHFDALHQPG WGREEDNHIF ITPEASLISC NSSANSASLH TGHVKTEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-104bHLH family protein