PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0480001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 179aa MW: 19917.4 Da PI: 6.8007 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.8 | 7.8e-08 | 63 | 104 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR++i +++ L++l+P +k Ka +L + ++YI+sLq RcHm_v2.0_Chr3g0480001 63 RGRREKISQRMKILQDLVPGY----NKVIGKALVLDEIINYIQSLQ 104 89******************8....667*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MVSTSSANGL KYSSGKRMKL EGSRNENGNS KAEVETSSGA DDKPEEQSTK PSEPPKQDYI 60 HVRGRREKIS QRMKILQDLV PGYNKVIGKA LVLDEIINYI QSLQRQVEFL SLNIEAVNSR 120 VNMNPAIEAF PSKDVFFPSA QQFDAAALLF GPHTPREYVQ GSQAEWLHMQ VGGCLDFVS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 8e-50 | bHLH family protein |