PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0479881

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 701aa MW: 77684.2 Da PI: 9.7985

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0479881	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.6e-12	17	68	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 WTt+E++ll++av+++G+ +W+++a+ + ++t+ ck+++++++ RcHm_v2.0_Chr3g0479881 17 TWTTWEELLLACAVHRYGTQSWDSVAAQLRkrssnlHHLTPQICKHKFHDLR 68 7*****************************9999999999999999999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MDKPNFPEKQ TTATTTTWTT WEELLLACAV HRYGTQSWDS VAAQLRKRSS NLHHLTPQIC 60 KHKFHDLRRR FNHHDDAVCG GDGAASSPIP WLDQLRQQRL DELRREVQRS DVSIVSLQSK 120 VERLKEVREK SDLDKSGEEE EIKDKSVEPE NISPENVAEK EVSERNDGRS FDESNTTDPK 180 PEIPETGVDA AEKESEPVEP AAGEIGAVEK SSNPVVVEDS CNGSSDSVVK EAPVAESEKA 240 NSGELRESVA ESKGTKESRS SSEVQSSASL SRKLGPELKP VEPDQEDQSP AMNQIPVESQ 300 PLVDFLGILR SHKAASFFES RLQSQDTSIY TNMIRQHTDF ELVQTRLNGG WYSSCKSKFF 360 RDILLICKNA IVFFGKRAPE YTAACELQLL VLKEMARKDR YQDPSPKQET HMPSKEETLT 420 PPALPLKPET ESSESLLAKS KLSIPLTACR KRSSIKARAS TSSSAPDIKK EQKTTLLRDV 480 KPAISWKQKE DSSDEVEEQL PVTKKRRKER VGSNSRNNSN KNSRSRSDTK KEKNPDANAN 540 ANVGSSTRAM ISNENSESIA EMDKKSNSNT SGKRQSAEKF LSRMKRSSGS NNKSETLKIP 600 ENDSKGAAEQ RKNGNIKGNA QKTAEQRKNG NGKGSAQKEV AEQKKGGNGK GNAQKEQASR 660 RGSGGRQAAK EQGSPTKRSV GRPSKRAAET TRAAPAKRRR Y

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MDKPNFPEKQ TTATTTTWTT WEELLLACAV HRYGTQSWDS VAAQLRKRSS NLHHLTPQIC  60
KHKFHDLRRR FNHHDDAVCG GDGAASSPIP WLDQLRQQRL DELRREVQRS DVSIVSLQSK  120
VERLKEVREK SDLDKSGEEE EIKDKSVEPE NISPENVAEK EVSERNDGRS FDESNTTDPK  180
PEIPETGVDA AEKESEPVEP AAGEIGAVEK SSNPVVVEDS CNGSSDSVVK EAPVAESEKA  240
NSGELRESVA ESKGTKESRS SSEVQSSASL SRKLGPELKP VEPDQEDQSP AMNQIPVESQ  300
PLVDFLGILR SHKAASFFES RLQSQDTSIY TNMIRQHTDF ELVQTRLNGG WYSSCKSKFF  360
RDILLICKNA IVFFGKRAPE YTAACELQLL VLKEMARKDR YQDPSPKQET HMPSKEETLT  420
PPALPLKPET ESSESLLAKS KLSIPLTACR KRSSIKARAS TSSSAPDIKK EQKTTLLRDV  480
KPAISWKQKE DSSDEVEEQL PVTKKRRKER VGSNSRNNSN KNSRSRSDTK KEKNPDANAN  540
ANVGSSTRAM ISNENSESIA EMDKKSNSNT SGKRQSAEKF LSRMKRSSGS NNKSETLKIP  600
ENDSKGAAEQ RKNGNIKGNA QKTAEQRKNG NGKGSAQKEV AEQKKGGNGK GNAQKEQASR  660
RGSGGRQAAK EQGSPTKRSV GRPSKRAAET TRAAPAKRRR Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	504	508	KKRRK
2	504	533	KKRRKERVGSNSRNNSNKNSRSRSDTKKEK
3	505	534	KKRRKERVGSNSRNNSNKNSRSRSDTKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	6e-74	MYB_related family protein