PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0476211

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 582aa MW: 67723.8 Da PI: 8.7059

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0476211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.2	8.6e-16	1	83	10	90
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +GF+vrk+ +++s r+g++t r++vCs eg+r e+ + +++ r +++ tr++C + +kv+ k ++ ++v +++++H+H+la RcHm_v2.0_Chr3g0476211 1 MGFDVRKDDKRTSARTGRVTIRKWVCSAEGERLEKYMDnNNNVRMPKKLTRCHCPCLFKVRYFKeKNSYVVVDFKTDHSHDLA 83 7*****************************99988745666779***********999899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MGFDVRKDDK RTSARTGRVT IRKWVCSAEG ERLEKYMDNN NNVRMPKKLT RCHCPCLFKV 60 RYFKEKNSYV VVDFKTDHSH DLAQPQESHF LRSHRSVPDS HLALATSMRR VSIKTCHAYQ 120 YMADISGGFA NVGFKMKDLY NKLDSSQHEI VLEGDAKATL AYLEGKAAED KKLFCKYSTY 180 ESNRLANLFW RDSTSLLDYC CFGDVLVFDS TYKTNHYGKP LVLFVGSNNH LLTTIFGFAL 240 LVDETVETYT WVLQMFLESM EGKKPLGILT DGDEAMRKAI ELVVPGCPHR LCTWHISKNA 300 QKKLHNPETV AEFRRCMFDE TTPCGFEQRW RAMVEKYGLH NRNWVKMMYD KREKWAEAFV 360 SGHFFARMRS TQRCERMNRY VKDSLSFSGV KLIELIPQLD KALERLRNKV AEEDFRSNNS 420 AHALSTQLRQ LEKHASTIYT DNVFQLICVE IDRVGGLITS RIMHLNSCRV YITSSYNNDE 480 EKECTTTYYH RESDPRVVCS CKLYECEGIP CSHLFNVMKH ERMREIPLSL VLKRWTKQAK 540 SEVHSTVPKE NMPSEAVRLA RDINILVNIS DIFFFISYNK LM

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MGFDVRKDDK RTSARTGRVT IRKWVCSAEG ERLEKYMDNN NNVRMPKKLT RCHCPCLFKV  60
RYFKEKNSYV VVDFKTDHSH DLAQPQESHF LRSHRSVPDS HLALATSMRR VSIKTCHAYQ  120
YMADISGGFA NVGFKMKDLY NKLDSSQHEI VLEGDAKATL AYLEGKAAED KKLFCKYSTY  180
ESNRLANLFW RDSTSLLDYC CFGDVLVFDS TYKTNHYGKP LVLFVGSNNH LLTTIFGFAL  240
LVDETVETYT WVLQMFLESM EGKKPLGILT DGDEAMRKAI ELVVPGCPHR LCTWHISKNA  300
QKKLHNPETV AEFRRCMFDE TTPCGFEQRW RAMVEKYGLH NRNWVKMMYD KREKWAEAFV  360
SGHFFARMRS TQRCERMNRY VKDSLSFSGV KLIELIPQLD KALERLRNKV AEEDFRSNNS  420
AHALSTQLRQ LEKHASTIYT DNVFQLICVE IDRVGGLITS RIMHLNSCRV YITSSYNNDE  480
EKECTTTYYH RESDPRVVCS CKLYECEGIP CSHLFNVMKH ERMREIPLSL VLKRWTKQAK  540
SEVHSTVPKE NMPSEAVRLA RDINILVNIS DIFFFISYNK LM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-81	FAR1 family protein