PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0475421

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

E2F/DP

Protein Properties

Length: 476aa MW: 52302.4 Da PI: 4.6713

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0475421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.2	2.4e-27	149	214	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r ++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg RcHm_v2.0_Chr3g0475421 149 RFDSSLGLLTKKFINLIKQAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 214 6789****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MSGCARAPSR QPGPPPPPAT GGGSQIVPPM RRHLVFESNK PPFFPPADYH QFSGGAQRPA 60 DQEPEAIVVR SPQFIRKGAV DNNEAENNDW TSSPGYNNMI QSPLQTPVST TKAGRTNNRT 120 KASKGKSGPQ TPASNAGSPC PLTPAGSCRF DSSLGLLTKK FINLIKQAED GILDLNKAAE 180 TLEVQKRRIY DITNVLEGIG LIEKKLKNRI RWKGFDASRP GDLDADLSIL QGEVESLSLK 240 ERSLDDRIRE MEEKLRDLSG DENNRKWLFV TEEDIKGLPC FQNETLIAIK APHGTTLEVP 300 DPDEAVDYPQ RRYRIILRST MGPIDVYLVS QFEEKFDDIN GVEPPASFPI VSGSGSNEQS 360 TTEMVNGQNR GKEIDPRAQQ AQVDQTCSDV NASQEFGGGM MRIVPSDVDN DADYWLLSGV 420 DVSITDMWRT DSAIEWNGED MLNADFGLPD VSTPRPQTPP SGIVEVPSHA VNFSQR

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MSGCARAPSR QPGPPPPPAT GGGSQIVPPM RRHLVFESNK PPFFPPADYH QFSGGAQRPA  60
DQEPEAIVVR SPQFIRKGAV DNNEAENNDW TSSPGYNNMI QSPLQTPVST TKAGRTNNRT  120
KASKGKSGPQ TPASNAGSPC PLTPAGSCRF DSSLGLLTKK FINLIKQAED GILDLNKAAE  180
TLEVQKRRIY DITNVLEGIG LIEKKLKNRI RWKGFDASRP GDLDADLSIL QGEVESLSLK  240
ERSLDDRIRE MEEKLRDLSG DENNRKWLFV TEEDIKGLPC FQNETLIAIK APHGTTLEVP  300
DPDEAVDYPQ RRYRIILRST MGPIDVYLVS QFEEKFDDIN GVEPPASFPI VSGSGSNEQS  360
TTEMVNGQNR GKEIDPRAQQ AQVDQTCSDV NASQEFGGGM MRIVPSDVDN DADYWLLSGV  420
DVSITDMWRT DSAIEWNGED MLNADFGLPD VSTPRPQTPP SGIVEVPSHA VNFSQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-178	E2F/DP family protein