PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0472411

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 402aa MW: 44108.9 Da PI: 8.7972

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0472411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.4	1.4e-24	152	195	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep rCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e RcHm_v2.0_Chr3g0472411 152 DPEPTRCRRTDGKKWRCSRDVVTGQKYCERHVHRGRNRSRKHVE 195 79****************************************98 PP
2	QLQ	53.2	9e-19	85	121	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i++ RcHm_v2.0_Chr3g0472411 85 SYFSMSQWQELELQALIFRYMLAGAAVPPELLQPIKR 121 79*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MDFQLKQWRN QQHESEEQQP YSSATKIPKL EHLQTQTHPE PASGYALPLF VPEPNTKVIS 60 NLSAFSESIT PTPASSATRF PRMGSYFSMS QWQELELQAL IFRYMLAGAA VPPELLQPIK 120 RSLLHSQFFF HHPLQQYPAL LQSGYWGRGA MDPEPTRCRR TDGKKWRCSR DVVTGQKYCE 180 RHVHRGRNRS RKHVEVTTTA TTTTTAAGGG GVRTLDAATS NAVVTVASSL GNGSDGTHFA 240 LSGSSPSIDL LQLKQSSLES KHENKSFFDN RREVSGSIQS DNHILRPFFD DWPGQLQEPD 300 NGRGNASSMN SATSLSISIR GNTSSSDVSL KLSTGNGVEP GQESEQPQLN WPTGWGTNHV 360 ASMGGPLAEA LRSSNSNSNS SPTSVLHRLP RGSVNETSFI ST

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MDFQLKQWRN QQHESEEQQP YSSATKIPKL EHLQTQTHPE PASGYALPLF VPEPNTKVIS  60
NLSAFSESIT PTPASSATRF PRMGSYFSMS QWQELELQAL IFRYMLAGAA VPPELLQPIK  120
RSLLHSQFFF HHPLQQYPAL LQSGYWGRGA MDPEPTRCRR TDGKKWRCSR DVVTGQKYCE  180
RHVHRGRNRS RKHVEVTTTA TTTTTAAGGG GVRTLDAATS NAVVTVASSL GNGSDGTHFA  240
LSGSSPSIDL LQLKQSSLES KHENKSFFDN RREVSGSIQS DNHILRPFFD DWPGQLQEPD  300
NGRGNASSMN SATSLSISIR GNTSSSDVSL KLSTGNGVEP GQESEQPQLN WPTGWGTNHV  360
ASMGGPLAEA LRSSNSNSNS SPTSVLHRLP RGSVNETSFI ST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-88	GRF family protein