PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0470621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 229aa MW: 26552.6 Da PI: 5.2149

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0470621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.4e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l +v++ G ++W++ a++ g++R++ +c++rw++yl RcHm_v2.0_Chr3g0470621 15 KGPWLEEEDERLTMYVRLKGDRRWDALAKESGLRRSGRSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	48.9	1.5e-15	72	113	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + eE+++++++++++G++ W++Iar ++ gRt++++k++w+++l RcHm_v2.0_Chr3g0470621 72 SVEEEKIILHLHELWGNK-WSKIARVLP-GRTDNEIKNYWRTHL 113 78**************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MAYEAAAVEG EKLRKGPWLE EEDERLTMYV RLKGDRRWDA LAKESGLRRS GRSCRLRWLN 60 YLRPDLKHGH ISVEEEKIIL HLHELWGNKW SKIARVLPGR TDNEIKNYWR THLVKKAQIQ 120 DGDAASAGNL QCTSKRAQQG LFFQDGDDMS AEKKYNFDQD LDSVEKLWGA KETYSDDLCL 180 SDFALPSSPY ETWLSDWISE LSSEQSGITW IPHHDSDAWD CSSSLWDMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	5e-42	MYB family protein