PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0470571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 280aa    MW: 31497.1 Da    PI: 7.9552
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0470571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.76.2e-16107167357
                             --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr3g0470571 107 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 167
                             7****************96569*************************************97 PP
2Wus_type_Homeobox94.11.2e-30106168364
       Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                             ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr3g0470571 106 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 168
                             78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MCPSRVNNFS VFLGDFNPTR RFNLRDRRSN GGDLLTRSRN RCILSDCSLQ KKILPSSSLS  60
LSTLQPFFRN SNPFFINMEP QTLQLMEQQT QQQIEDGGNN QAAGTNNRWA PTPPQLRILK  120
GLYYDKGFKY PTPEQIQEIC LHLKQYGQIE DKNVFFWFQN LKARERQKLK EFRNVPVGGS  180
LDLNFGSTSS TDDGRSIDLN FGSRVGYGVD PYSSSPFNTN TSTTSFGTTG GQSFMEQRGG  240
DHQEIETLPL FPMHGEDIFG NMKTTSEVGG DYGGGSHISL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-21WOX family protein