PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0470381
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 323aa    MW: 35976.9 Da    PI: 6.9865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0470381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-161462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  RcHm_v2.0_Chr3g0470381 14 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                            79*********************************************97 PP
2Myb_DNA-binding41.82.4e-1369111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g ++ eEd+++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  RcHm_v2.0_Chr3g0470381  69 GEFSDEEDKIICNLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                             789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGRAPCCDKD NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDKIIC NLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLNQY  120
SMMGIIPHHS ATFSSLLHHQ TSTSSSSPPS YRSSNNTSTP TYYTHQPRSF TSTANLESHI  180
PFSPSLLSST NTTTNAALQV GQESYVSQPL TQHYQAKDNI LMFGGTTTEA SCSSSDGSYG  240
TGYSEVQLGL QNYFYNNGAE ANNQKIMVSD NGLGLDLDHD QAPLDYGLEE IKQLISSSTT  300
TSGGCNNFLF DENKTEEKVM MYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-76MYB family protein