PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0470121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 772aa MW: 85365.2 Da PI: 7.4512

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0470121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.2e-07	44	86	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E++ + a +q G++ +++I +++ + q++++++ + RcHm_v2.0_Chr3g0470121 44 AWTHQEEQSFFAALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 86 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence
MDSEAHPRQE SILVQEGDPA LAPSTSNHVA IQQPVKKPTR QWAAWTHQEE QSFFAALRQV 60 GKNFEKITCR VQSKNKDQVR HYYYRLVRRM NKLLGPGLYL DSRNSKDTNA AMLRWWSLLE 120 KYSCKASKLH LKPRRFKIFM EALEHQLLKD RKKTVRKRPS QGENCPPEAP STVSNQSRPS 180 EHDRPVKLVL VDSHNIQKSG PGKASLKRSG SIGVNRGNKG DASTMKPARQ RRKPAAYKKW 240 EKAAIAGVSL VADAAEHLER TIDKDVGQDK SSAEKNSAVP VGNFLPPMPN FPQNIYAENN 300 INNSVKLKLQ LFPIDDSTRK ALEMDKHNPH LELTLPTRKK ISSVMEHLNR KWGSSSVASG 360 ELMLFPNSVQ QDCPTGYLRW TQDSNVSAGD VYAMIGSPPV FRLRYGWFST TELGSVSSQA 420 PVASCTIPVE HDMNVEKMKD PVLESASISP LSASNQCVDI HKDLLPSVTK SHSLAQTSAG 480 EPNQKNNLEG DPTESASWHE KVAGDEGILR HQGEVDGLRL HNGTALSAKE WADSLTNISV 540 GDLLSGVPHD LDANCIDQPL AGRSQCLPQI PFSCDSFDAA IAAHISRQKN KMGCEPTMVS 600 HVSSIWDAEE TCDAFVFQKN SAFRQQSTSS SGVAPPGACK LMASTSLVGC DRMVEDLPAV 660 ERPINDPQRD PMDECQSDPH ILESSVKDFN ALADIYWPES LGPLDLELPS SKYHNEDFIL 720 NDSLSGLNRL IASSLDAFQN CSFFGSNKKE PTPSVEARET ISFSDFKIGN GI

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence

MDSEAHPRQE SILVQEGDPA LAPSTSNHVA IQQPVKKPTR QWAAWTHQEE QSFFAALRQV  60
GKNFEKITCR VQSKNKDQVR HYYYRLVRRM NKLLGPGLYL DSRNSKDTNA AMLRWWSLLE  120
KYSCKASKLH LKPRRFKIFM EALEHQLLKD RKKTVRKRPS QGENCPPEAP STVSNQSRPS  180
EHDRPVKLVL VDSHNIQKSG PGKASLKRSG SIGVNRGNKG DASTMKPARQ RRKPAAYKKW  240
EKAAIAGVSL VADAAEHLER TIDKDVGQDK SSAEKNSAVP VGNFLPPMPN FPQNIYAENN  300
INNSVKLKLQ LFPIDDSTRK ALEMDKHNPH LELTLPTRKK ISSVMEHLNR KWGSSSVASG  360
ELMLFPNSVQ QDCPTGYLRW TQDSNVSAGD VYAMIGSPPV FRLRYGWFST TELGSVSSQA  420
PVASCTIPVE HDMNVEKMKD PVLESASISP LSASNQCVDI HKDLLPSVTK SHSLAQTSAG  480
EPNQKNNLEG DPTESASWHE KVAGDEGILR HQGEVDGLRL HNGTALSAKE WADSLTNISV  540
GDLLSGVPHD LDANCIDQPL AGRSQCLPQI PFSCDSFDAA IAAHISRQKN KMGCEPTMVS  600
HVSSIWDAEE TCDAFVFQKN SAFRQQSTSS SGVAPPGACK LMASTSLVGC DRMVEDLPAV  660
ERPINDPQRD PMDECQSDPH ILESSVKDFN ALADIYWPES LGPLDLELPS SKYHNEDFIL  720
NDSLSGLNRL IASSLDAFQN CSFFGSNKKE PTPSVEARET ISFSDFKIGN GI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	MYB_related family protein