PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0468461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 289aa    MW: 31883 Da    PI: 7.6297
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0468461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-143175147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
  RcHm_v2.0_Chr3g0468461 31 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 75
                            789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MINPSSFNPQ PMSSDASGKK VRKPYTITKS RESWTEEEHD KFLEALQLFD RDWKKIEDFV  60
GSKTVIQIRS HAQKYFLKVQ KNGTTAHVPP PRPKRKASHP YPQKASKNVL IPFQASLAYP  120
SSMNAIAPGY CPWDEASIFL NAGSDQIVLS HEEFINRQGT EADIGSKGVA IISTCDPSGI  180
ASSSRTLPSS EIPKQGSQVP VSHGIPDFAE VYSFIGGVFD PDTEGHAQKL KEMDPINFET  240
VLLLMRNLSI NLSSPDFEPI RKVLVSNDAN MKTAAAGNTP SYRNNDLSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-134MYB_related family protein