PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0467691
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 212aa    MW: 23507.9 Da    PI: 4.6858
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0467691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.71.5e-163191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+t+t++ql++L+el++    + p+ e+++e+  +l    +++ ++V++WFqN +a+e++
  RcHm_v2.0_Chr3g0467691 31 NRWTPTPDQLRILQELYYDkvLKSPTPEQIQEICLHLqqygQIEGKNVFFWFQNLKARERQ 91
                            7****************96679*************************************97 PP
2Wus_type_Homeobox97.51.1e-313092364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RWtPtp+Q++iL+ely+ + l++P+ e+iq+i  +L++yG+ie+kNVf+WFQN kaRerqk
  RcHm_v2.0_Chr3g0467691 30 NNRWTPTPDQLRILQELYYdKVLKSPTPEQIQEICLHLQQYGQIEGKNVFFWFQNLKARERQK 92
                            78***************986889***************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MELQAHQPTE EGGSIQAAGS SANTPIRLTN NRWTPTPDQL RILQELYYDK VLKSPTPEQI  60
QEICLHLQQY GQIEGKNVFF WFQNLKARER QKLREFRNVR VGGSLDLNFG STSSTDDGRS  120
IDLNFGSTGS TSTDRSIDLN FGSRVGYGVD GSIMEQRGEY HQEIETLPLF PMHGEDIFGN  180
MKTTSEGGSG YGGGSRISLE LSLNSYGDAD MA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-27WOX family protein