PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0466841
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 301aa    MW: 33434.6 Da    PI: 7.9636
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0466841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.13.5e-2472150471
                 E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              +Lr+++     +++k ++ g+ t+neva+e++se              d+kn+rRR+YD+lNVL+a+++i+k ek++i+wkg
  RcHm_v2.0_Chr3g0466841  72 GGLRQFSAI---VCSKLKSkGRATYNEVADEIISElpgiygetealsefDEKNIRRRVYDALNVLMAMDIITK-EKKQIQWKG 150
                             69*******...****9999*****************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MEFEYFGDSF GELSRRNSSP ITPRSASASN AAASESVRSS SNSMTFHCDS TSTPDVDKNA  60
GKKKRGSRYT AGGLRQFSAI VCSKLKSKGR ATYNEVADEI ISELPGIYGE TEALSEFDEK  120
NIRRRVYDAL NVLMAMDIIT KEKKQIQWKG LPDTNVIDLE GIKAQRVKLM GRIGAKEAYL  180
KDLEEQMADL QNLMLRNKQL IKSGNSRHKG FSFPFILAQT SNNATVEIEI SEDMQLVHCD  240
FNSTPFSLHD DTSILKLLRC HQLPESRNVS QSSSVYSSSS SGMASGGTRP FLWNSETETP  300
K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16288KKKRGSRYTAGGLRQFSAIVCSKLKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-81E2F/DP family protein