PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0466541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 670aa MW: 73833.5 Da PI: 7.99

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0466541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.2e-18	75	121	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+++ g++Wk+Ia++++ R++ qc +rwqk+l RcHm_v2.0_Chr3g0466541 75 KGGWTPQEDETLRNAVAKFKGKNWKKIAQYFP-DRSEVQCLHRWQKVL 121 688***************************.**********986 PP
2	Myb_DNA-binding	61.7	1.5e-19	127	173	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++v+++G+ W++I++ ++ gR +kqc++rw+++l RcHm_v2.0_Chr3g0466541 127 KGPWTQEEDDKIVELVAKYGPTKWSLISKSLP-GRIGKQCRERWHNHL 173 79****************************.***********97 PP
3	Myb_DNA-binding	50.2	5.7e-16	179	222	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT E++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++ RcHm_v2.0_Chr3g0466541 179 REAWTLVEELALMHAHRMHGNK-WAEIAKALP-GRTDNAIKNHWNS 222 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MSFNLIPSTS SQPEQRRSEV PIEECCLVNK QSTAASSSDS EGSESPVLKS PGIGSSPAEA 60 SPVNKRITGP IRRAKGGWTP QEDETLRNAV AKFKGKNWKK IAQYFPDRSE VQCLHRWQKV 120 LNPELVKGPW TQEEDDKIVE LVAKYGPTKW SLISKSLPGR IGKQCRERWH NHLNPDIKRE 180 AWTLVEELAL MHAHRMHGNK WAEIAKALPG RTDNAIKNHW NSSLKKKLDF YLATGQLPPQ 240 PKNSYPNVPK ETNRSIATRR LLVGSDKGSD STARTLPGNA DTRKIDEDGK DHQLQSSEPL 300 DMDMCAFYLA TGQLPPVPKN SFPNDAKETN RSTATTRLLV DSDKGSDSTA HTLSVNADTC 360 KIDDNGKDQL QSSSSQDMCG SSSILPDEHA DSEVIECRLR LSLTDPSCSN SESVPKFTNF 420 AVNSKLQIEN SGINSEPKYE NSEFNSQKVE DKVDSATVPV ETPSYGSLYY EPPPLDSSIP 480 LDSGLPNLHC FQHDYKSSPN WSPISFFTPP TAKSSGLYNR SPESILKIAA KTFPNTPSIL 540 RKRKSAQGHL PPNKLRIVDS ESVRETLIVP EEQERNKNSV ELSGSQDVSL CDSPTSQGIN 600 TTGPNGKAFN ASPPYRLRSR RTAVFKSVEK QLQFTCEEEY AGNSKPVGLS ANGGTAVTKD 660 CSHATKMGVT

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MSFNLIPSTS SQPEQRRSEV PIEECCLVNK QSTAASSSDS EGSESPVLKS PGIGSSPAEA  60
SPVNKRITGP IRRAKGGWTP QEDETLRNAV AKFKGKNWKK IAQYFPDRSE VQCLHRWQKV  120
LNPELVKGPW TQEEDDKIVE LVAKYGPTKW SLISKSLPGR IGKQCRERWH NHLNPDIKRE  180
AWTLVEELAL MHAHRMHGNK WAEIAKALPG RTDNAIKNHW NSSLKKKLDF YLATGQLPPQ  240
PKNSYPNVPK ETNRSIATRR LLVGSDKGSD STARTLPGNA DTRKIDEDGK DHQLQSSEPL  300
DMDMCAFYLA TGQLPPVPKN SFPNDAKETN RSTATTRLLV DSDKGSDSTA HTLSVNADTC  360
KIDDNGKDQL QSSSSQDMCG SSSILPDEHA DSEVIECRLR LSLTDPSCSN SESVPKFTNF  420
AVNSKLQIEN SGINSEPKYE NSEFNSQKVE DKVDSATVPV ETPSYGSLYY EPPPLDSSIP  480
LDSGLPNLHC FQHDYKSSPN WSPISFFTPP TAKSSGLYNR SPESILKIAA KTFPNTPSIL  540
RKRKSAQGHL PPNKLRIVDS ESVRETLIVP EEQERNKNSV ELSGSQDVSL CDSPTSQGIN  600
TTGPNGKAFN ASPPYRLRSR RTAVFKSVEK QLQFTCEEEY AGNSKPVGLS ANGGTAVTKD  660
CSHATKMGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-117	MYB family protein