PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0466491

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 359aa MW: 41486.6 Da PI: 10.0678

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0466491	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.3e-16	6	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m+ ++R +k+c +rw +yl RcHm_v2.0_Chr3g0466491 6 RQRWRPEEDALLRAYVKQYGPREWNLVSQRMNtpLNRDAKSCLERWKNYL 55 89**********************************************97 PP
2	Myb_DNA-binding	38	4e-12	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + RcHm_v2.0_Chr3g0466491 61 KGSLTEEEQRLVICLQEKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 105 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEMKERQRWR PEEDALLRAY VKQYGPREWN LVSQRMNTPL NRDAKSCLER WKNYLKPGIK 60 KGSLTEEEQR LVICLQEKHG NKWKKIAAEV PGRTAKRLGK WWEVFKEKQQ REQKNNKTVV 120 QPIEEGKYDR ILETFAEKLV KERPAPAYLM ATSKGAFLHN EVSPAPSMLP PWLSNSNVTS 180 HVRPPSPSVT LSLSPTVAPS RASPPIPWLQ PDRGPENSSF VLSNLPPPGS APCGENFVIS 240 ELVECSRELE EVHHAWAAHK KEASWRLRRV ELQLESEKAC RKREKMDEIE AKVKALREEQ 300 KAALERIEAE YREQIAGLRR DAELKEQKLA DQWSAKHMRL TKFLEQMGGR PRLAEPNGR

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEMKERQRWR PEEDALLRAY VKQYGPREWN LVSQRMNTPL NRDAKSCLER WKNYLKPGIK  60
KGSLTEEEQR LVICLQEKHG NKWKKIAAEV PGRTAKRLGK WWEVFKEKQQ REQKNNKTVV  120
QPIEEGKYDR ILETFAEKLV KERPAPAYLM ATSKGAFLHN EVSPAPSMLP PWLSNSNVTS  180
HVRPPSPSVT LSLSPTVAPS RASPPIPWLQ PDRGPENSSF VLSNLPPPGS APCGENFVIS  240
ELVECSRELE EVHHAWAAHK KEASWRLRRV ELQLESEKAC RKREKMDEIE AKVKALREEQ  300
KAALERIEAE YREQIAGLRR DAELKEQKLA DQWSAKHMRL TKFLEQMGGR PRLAEPNGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-147	MYB family protein