PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0466401

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 674aa MW: 74653.3 Da PI: 9.4607

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0466401	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.4e-08	581	630	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ RcHm_v2.0_Chr3g0466401 581 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 630 678999******************9776668************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MVPQRRVDYG FNGYQVPEVP RASRSARGKG PIRKKLEGNQ IHAFEILASV AGKLLESEKP 60 LPSNASSGKD PHYTFDDTIR KQQNKGNSLK EEPCEWGSCD EEASFRACGV QGQSHTLNQF 120 SHLQENFSFE MSGTSKTNVH SGKVCFAKKL GTVDSSSSCG SYSNKVISDC FLSGDYIEEE 180 DKAHVVLKRK LEAEPSKDTS VKDGKANVLV CSEDLLEMEG KPPELVCSEH DVKVPFSGEC 240 KIHGSFPCHC VKVVSRDDDE NSVGYVQPCT MVEEFEHTSV GDRKIKNLSA SKHWRIAPDM 300 KIGGYHRTDG KIKQVYRNGR PCYAHQRSQK IYPFKKRNFF NRRPFTTSDR GCNCENICSS 360 PDKREDGGNC NAAIGRSSST TGREPSKSND RNVRLSIKSF KVPELFFEIP TTATVGSLKR 420 TVMEAVTSIL GEGLHVGILV QGKKVRDDSK TLLQTGISHD DKLDNLGFTL EPKHSKLIYS 480 QCGNDPSSVS GRTQELTRHS ASLVSRPGTS NVSLNPPATN LGSCVDKGLN AVPSFASTSI 540 DKTPPASQAL VAVPPINAKP LAVVPFHRRS GHPAYVQRRM RRPFSVSEVE ALVQAVEKLG 600 TGRWRDVKMR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLAAHAY 660 WSQRQAKQQL RAAA

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MVPQRRVDYG FNGYQVPEVP RASRSARGKG PIRKKLEGNQ IHAFEILASV AGKLLESEKP  60
LPSNASSGKD PHYTFDDTIR KQQNKGNSLK EEPCEWGSCD EEASFRACGV QGQSHTLNQF  120
SHLQENFSFE MSGTSKTNVH SGKVCFAKKL GTVDSSSSCG SYSNKVISDC FLSGDYIEEE  180
DKAHVVLKRK LEAEPSKDTS VKDGKANVLV CSEDLLEMEG KPPELVCSEH DVKVPFSGEC  240
KIHGSFPCHC VKVVSRDDDE NSVGYVQPCT MVEEFEHTSV GDRKIKNLSA SKHWRIAPDM  300
KIGGYHRTDG KIKQVYRNGR PCYAHQRSQK IYPFKKRNFF NRRPFTTSDR GCNCENICSS  360
PDKREDGGNC NAAIGRSSST TGREPSKSND RNVRLSIKSF KVPELFFEIP TTATVGSLKR  420
TVMEAVTSIL GEGLHVGILV QGKKVRDDSK TLLQTGISHD DKLDNLGFTL EPKHSKLIYS  480
QCGNDPSSVS GRTQELTRHS ASLVSRPGTS NVSLNPPATN LGSCVDKGLN AVPSFASTSI  540
DKTPPASQAL VAVPPINAKP LAVVPFHRRS GHPAYVQRRM RRPFSVSEVE ALVQAVEKLG  600
TGRWRDVKMR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLAAHAY  660
WSQRQAKQQL RAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-122	MYB_related family protein