PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0461411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 231aa MW: 25297.9 Da PI: 4.798 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.3 | 4.1e-16 | 48 | 107 | 4 | 57 |
-SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+t+t+ ql++L+ l++ +++p+ e+++e+ +l ++++++V++WFqN +a++++ RcHm_v2.0_Chr3g0461411 48 RWTPTPAQLRILQGLYYDkgHKNPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKARDRQ 107 9***************9557*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 95.2 | 5.4e-31 | 46 | 108 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RWtPtp Q++iL+ ly+ +G ++P+ e+iq+i +L+ yG+iedkNVf+WFQN kaR+rqk RcHm_v2.0_Chr3g0461411 46 TIRWTPTPAQLRILQGLYYdKGHKNPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKARDRQK 108 67***************9889*****************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MEPRTLQLME LQTQQQTELQ AQQLTEEGGS NQVAGSSANT PIRPTTIRWT PTPAQLRILQ 60 GLYYDKGHKN PTPEQIQEIC LHLKPYGQIE DKNVFFWFQN LKARDRQKLK EFRKVRVGGS 120 LDLNFGSTSS TDGGRSIDLN FGSTDSTGDD GSIDLTLGLR SFMEQRGGDH QEVETLPLFP 180 EHGENIIGNP KTTSEGGSSF GYYSGVSGGY NSGSPVSLEL SLNPSGATDL A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 1e-15 | WOX family protein |