PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0458701

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 727aa MW: 78158.1 Da PI: 6.6404

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0458701	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.7	3.3e-16	462	508	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq RcHm_v2.0_Chr3g0458701 462 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 508 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MPLSELYRMA RGRSDSNPDF EPVNDFVELV WENGQIMMQG QSSRARKSPT FNSLPSHTPK 60 NRDRDLGNGT NGKMGKFGSV DSVMDEIALS VPSVEMGLSD DDDMLPWLNY ALDQPLQHEY 120 SHDFMPEISG VNANEISTNG NLASIEKRSS SSQIYRECSP NSTHGGALLE QRNVSKLSSI 180 SAAEVSRPRA STTHLYQMSS QQSQASIPSF RSIASDMVAV NTSSADHHAV CKNSIQASPA 240 GGFPGITTQK QNPPTPSNNN STIVNFSHFS RPATLAKANL HNNGATSSSS LVRVEKIGNK 300 DKVSVATSSN PPESILIESS CSLLKESTSQ CQDVMAPSSV DMKPTTSKSL EEPRTTKQSE 360 AAYQEDASKN DDTNSNHIPC ESAIRALPDA EKTTEPVVAS SVCSGNSVEK ASDDPARALK 420 RKSRDTDDSE CHSEDVEEES VRVKKVAHGR GTGSKRSRAA EVHNLSERRR RDRINEKMRA 480 LQELIPNCNK VDKASMLDEA IEYLKTLQLQ VQIMSMGAGL YMPQMMLPPG MQHMHAPRMA 540 HFSHMGVGMG MGLGMGFGMG MPDMNGGSSG YPMLQVPPMQ GAHFPGSPMS GHTAFNGMVG 600 ANLQMFGLPG QGVPIPMQRA PLVPVSGGPF MKSAVRPNGC GAGGPVEPAQ ASSSKDSVQN 660 MNSQVMQNTN TNSSMNQTSN QCQTTNEVFG QSAFVQNNVQ ASDVSTSGAN RSTNGKDQVL 720 SRPASYD

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MPLSELYRMA RGRSDSNPDF EPVNDFVELV WENGQIMMQG QSSRARKSPT FNSLPSHTPK  60
NRDRDLGNGT NGKMGKFGSV DSVMDEIALS VPSVEMGLSD DDDMLPWLNY ALDQPLQHEY  120
SHDFMPEISG VNANEISTNG NLASIEKRSS SSQIYRECSP NSTHGGALLE QRNVSKLSSI  180
SAAEVSRPRA STTHLYQMSS QQSQASIPSF RSIASDMVAV NTSSADHHAV CKNSIQASPA  240
GGFPGITTQK QNPPTPSNNN STIVNFSHFS RPATLAKANL HNNGATSSSS LVRVEKIGNK  300
DKVSVATSSN PPESILIESS CSLLKESTSQ CQDVMAPSSV DMKPTTSKSL EEPRTTKQSE  360
AAYQEDASKN DDTNSNHIPC ESAIRALPDA EKTTEPVVAS SVCSGNSVEK ASDDPARALK  420
RKSRDTDDSE CHSEDVEEES VRVKKVAHGR GTGSKRSRAA EVHNLSERRR RDRINEKMRA  480
LQELIPNCNK VDKASMLDEA IEYLKTLQLQ VQIMSMGAGL YMPQMMLPPG MQHMHAPRMA  540
HFSHMGVGMG MGLGMGFGMG MPDMNGGSSG YPMLQVPPMQ GAHFPGSPMS GHTAFNGMVG  600
ANLQMFGLPG QGVPIPMQRA PLVPVSGGPF MKSAVRPNGC GAGGPVEPAQ ASSSKDSVQN  660
MNSQVMQNTN TNSSMNQTSN QCQTTNEVFG QSAFVQNNVQ ASDVSTSGAN RSTNGKDQVL  720
SRPASYD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	467	472	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-55	bHLH family protein