PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0458061
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 85aa    MW: 9577.69 Da    PI: 9.6044
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0458061genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.6e-081356344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            +WT    +l+ +a + + ++   +W+  a+ +g g++++++k ++
  RcHm_v2.0_Chr3g0458061 13 SWTLKQNKLFENALAVYDKDtqdRWHNLAKAVG-GKSAEEVKRHY 56
                            7********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    
MASLTSSRNS NSSWTLKQNK LFENALAVYD KDTQDRWHNL AKAVGGKSAE EVKRHYEILV  60
QDLMHIESGQ VALPNYRATG SNSRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-36MYB_related family protein