PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0457291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 196aa MW: 21914.4 Da PI: 11.7942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00017 | 125 | 169 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rErrR + ++ L +l+P + +K Le++++YI L RcHm_v2.0_Chr3g0457291 125 DVRRERRRTPAVQKKVKVLSQLVPGC-----RKAPLPNLLEETTDYIAAL 169 5679*********************9.....67777789********988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MAASFVSNPD PCLDSSRKKR RKVEDDRNPA STTQARWRSD KEQRIYSTKL VEALRKVRQG 60 SSSSPVAVSG GKIVKEAADR VLAVAAKGTT RWSRAILRSR LRLSKRLQKC RKARVTGDSR 120 CKRADVRRER RRTPAVQKKV KVLSQLVPGC RKAPLPNLLE ETTDYIAALE MQVRAMTVLT 180 ELLSGAPAAN RLNFTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 22 | KKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06590.2 | 7e-20 | bHLH family protein |