PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0457121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 329aa MW: 37155.7 Da PI: 4.7205

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0457121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.6e-09	258	290	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L+ +gL++rq+ +WF N+R ++ RcHm_v2.0_Chr3g0457121 258 PYPTEEEKMQLSVATGLDQRQINNWFINQRKRH 290 8*****************************885 PP
2	ELK	30.9	5.9e-11	210	231	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+ Lk+ F+ RcHm_v2.0_Chr3g0457121 210 ELKDMLLHKYSGYLSKLKKDFL 231 9********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MDDFYRLNPM NIISSSSENV NQVQNDTRTT ATCGGAGYHG GPLILSDGNL NLNMLQFETD 60 QSMNQLIKTQ IANHPRYPDL VSAYIDCQKV GAPPEMKSLL EEIGRLSLPI STCRSEIGAD 120 PELDEFMDSY CGILHTYKEE LSKPVVEATA FLSNIELQLS NLCKGTFQKP NSDYHSTDEA 180 VGSSEEDLSY GEVEAAEGQE ISAFRACDRE LKDMLLHKYS GYLSKLKKDF LKTRKKGKLP 240 KDARSALLDW WNTHYRWPYP TEEEKMQLSV ATGLDQRQIN NWFINQRKRH WKPSEDMKFA 300 LMENVSGSIN GEGGPSMLFD TGFGNDDMM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	8e-86	TALE family protein