PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0455471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 103aa MW: 11456.8 Da PI: 6.7811 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.6e-07 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ + + a +++ ++ +W +ar +g ++t++++k ++ RcHm_v2.0_Chr3g0455471 15 SWTAKQNKAFEIALALYDKDtadRWYNVARAVG-NKTPEEVKRHY 58 7********************************.**********9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence |
MASSSMSTSC NSGSSWTAKQ NKAFEIALAL YDKDTADRWY NVARAVGNKT PEEVKRHYDL 60 LVEDVKLIES GQIPFPDYMT CGGSGSGNIG HDEEKRMRNL KLH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-39 | MYB_related family protein |