PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0449801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 985aa MW: 110440 Da PI: 5.0321

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0449801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.9e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l RcHm_v2.0_Chr3g0449801 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l RcHm_v2.0_Chr3g0449801 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRQR KRKRKGIDYN AEIPFEKKPP PGFYDVADED RPVDQPQFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYANDLA GSELTEGSGA TRALLANYAQ TPRLGMTPSR TPQRTPAGKG 360 DAIMMEASNL AMLRESQTPL LGGENPQLHP SDFSGVTPRK KEIQTPNLML TPSTPGGAGL 420 TPRIGLTPAR DSFGMTPKGT PMRDELRINE DVDMHDSAKM EHRRQAELRK NLQMGLSKLP 480 QPKNEYQIVM QPVPEDNEEP EEKIEEDMSD RIARERAEEE ARQQALLRKR SKVLQRELPR 540 PPAPSVESLR KSLLRADEDK SKVVPPTSIE QANEMIAKEL LSLLEHDNVK YPLDEKVDKR 600 KKKGTKRSAN GSTPTVPEIE DFEEDELKEA DSMIKEEVEY LRVAMGHEDK SLDEFVEVHK 660 TCMNDFMFFP RRNAYGASSI AGNEEKLEAL QNEFENVKKK LDDDLGKAAS LEKKVKVRTH 720 GYEMRAKEVH WPKIEETFKQ LDTAEKELEC FRALQKQEQL AASHRINNLW EEVQKQKELE 780 RTLQKRYGGL IAEVERVQHL REKYIAQEQE QKEVAARNDL ELADAAADVA VAQSTVNTSD 840 SDELAASHGE TTDPQVDGID VDAEKKDDMT VTTDVNVPNS TPSAAEGEND IPLQGTSGEG 900 SDTHLSTSDG IYPSGVAAQD SVSNGDAVSG TVDNVLPTEK LTSTDVANDQ VVGAEVAGDD 960 GLVSADATTV SAEVVDLAEN APTQL

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRQR KRKRKGIDYN AEIPFEKKPP PGFYDVADED RPVDQPQFPT  240
TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYANDLA GSELTEGSGA TRALLANYAQ TPRLGMTPSR TPQRTPAGKG  360
DAIMMEASNL AMLRESQTPL LGGENPQLHP SDFSGVTPRK KEIQTPNLML TPSTPGGAGL  420
TPRIGLTPAR DSFGMTPKGT PMRDELRINE DVDMHDSAKM EHRRQAELRK NLQMGLSKLP  480
QPKNEYQIVM QPVPEDNEEP EEKIEEDMSD RIARERAEEE ARQQALLRKR SKVLQRELPR  540
PPAPSVESLR KSLLRADEDK SKVVPPTSIE QANEMIAKEL LSLLEHDNVK YPLDEKVDKR  600
KKKGTKRSAN GSTPTVPEIE DFEEDELKEA DSMIKEEVEY LRVAMGHEDK SLDEFVEVHK  660
TCMNDFMFFP RRNAYGASSI AGNEEKLEAL QNEFENVKKK LDDDLGKAAS LEKKVKVRTH  720
GYEMRAKEVH WPKIEETFKQ LDTAEKELEC FRALQKQEQL AASHRINNLW EEVQKQKELE  780
RTLQKRYGGL IAEVERVQHL REKYIAQEQE QKEVAARNDL ELADAAADVA VAQSTVNTSD  840
SDELAASHGE TTDPQVDGID VDAEKKDDMT VTTDVNVPNS TPSAAEGEND IPLQGTSGEG  900
SDTHLSTSDG IYPSGVAAQD SVSNGDAVSG TVDNVLPTEK LTSTDVANDQ VVGAEVAGDD  960
GLVSADATTV SAEVVDLAEN APTQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDNRQRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein