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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0449251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 268aa MW: 30863.6 Da PI: 8.7994 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.9 | 6e-09 | 38 | 71 | 1 | 37 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 s+y+GV +++ +grW+A+I + g +k+ +lg++ RcHm_v2.0_Chr3g0449251 38 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYS 71 89****99**********99966...3.6*******96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence |
MLQLETYTKE LDEMQKVSKE EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF 60 GNKYLYLGTY SSSNDNWANW LIPFCLTTDI GWRMQLGKRF WVLAADSQSL ESAIRCGGLA 120 KTKASCIKNM LSCLLEKKEK LCLEYLQDLS VDEIKAELSH FKGIGPKTVA CVLMFQLQQD 180 SFPVDTHVFE IAKAMAWVPV GADRNKTYLH LNQWIPDELK FDLNCLLYTH GKLCRKCIKK 240 GGSTSKQQEK EYEDINSNFM YAICNEVM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.2 | 6e-28 | ERF family protein |