PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0449251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 268aa    MW: 30863.6 Da    PI: 8.7994
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0449251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.96e-093871137
                     AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37
                            s+y+GV +++ +grW+A+I   +   g +k+ +lg++ 
  RcHm_v2.0_Chr3g0449251 38 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYS 71
                            89****99**********99966...3.6*******96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MLQLETYTKE LDEMQKVSKE EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  60
GNKYLYLGTY SSSNDNWANW LIPFCLTTDI GWRMQLGKRF WVLAADSQSL ESAIRCGGLA  120
KTKASCIKNM LSCLLEKKEK LCLEYLQDLS VDEIKAELSH FKGIGPKTVA CVLMFQLQQD  180
SFPVDTHVFE IAKAMAWVPV GADRNKTYLH LNQWIPDELK FDLNCLLYTH GKLCRKCIKK  240
GGSTSKQQEK EYEDINSNFM YAICNEVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.26e-28ERF family protein