PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0176421

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 500aa MW: 54552.8 Da PI: 4.9396

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0176421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.5e-11	315	357	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+++L RcHm_v2.0_Chr2g0176421 315 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLREL 357 79*******************66......*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MLPMSSGGVW MNREGEDAVS SWTSNPHNNN ETEPKDLTLA SFKAMLEGDW YLNNNNNNNV 60 VVLNQDNINC FSSNPFQMDT SASCSPSMAF TLLNSNPNPN SKSCFSSLRN SNPFDNNFNL 120 VGESELLTQL QQQNEALMNL AALNPHSQVA ATPALSSGTE FPSNQLLPAS GNTAGVFSNA 180 GFESSGSALL LNRAEDMSFP CSMGGAQPTL YQKRAALRQN STGSSGCDIL GNLEISGPSY 240 SGLGLEEKRK RRHNESEMED DMSSLNFYDS DGQAEEEEEG NVNNAAGGGY SNANSSVTDG 300 DFKGKKTGLP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLRELLGR 360 IDDLHKELES DAPGSSLQPS TNFNPLTPNS LTYPGRIKEE LRPSSLPTPK SQQPAAKVDV 420 QIREGRALNI RMLSPRRPGL LLSTMRALDN LGLDIQQAVI SCFNGFALDV FQAQQSRESH 480 FLPEQIRAVL LKSAGFDGMM

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MLPMSSGGVW MNREGEDAVS SWTSNPHNNN ETEPKDLTLA SFKAMLEGDW YLNNNNNNNV  60
VVLNQDNINC FSSNPFQMDT SASCSPSMAF TLLNSNPNPN SKSCFSSLRN SNPFDNNFNL  120
VGESELLTQL QQQNEALMNL AALNPHSQVA ATPALSSGTE FPSNQLLPAS GNTAGVFSNA  180
GFESSGSALL LNRAEDMSFP CSMGGAQPTL YQKRAALRQN STGSSGCDIL GNLEISGPSY  240
SGLGLEEKRK RRHNESEMED DMSSLNFYDS DGQAEEEEEG NVNNAAGGGY SNANSSVTDG  300
DFKGKKTGLP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLRELLGR  360
IDDLHKELES DAPGSSLQPS TNFNPLTPNS LTYPGRIKEE LRPSSLPTPK SQQPAAKVDV  420
QIREGRALNI RMLSPRRPGL LLSTMRALDN LGLDIQQAVI SCFNGFALDV FQAQQSRESH  480
FLPEQIRAVL LKSAGFDGMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	324	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	9e-96	bHLH family protein