PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0176341
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 354aa    MW: 39806.1 Da    PI: 5.5346
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0176341genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13122235184
                             EEEE-..-HHHHTT-EE--HHH.HTT..............................---..--SEEEEEETTS.-EEEEEE...EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............................ggkkeesktltledesg.rsWevkliy.rkk 55 
                             f+k+l++sdv++++r+vlpk+ a+                                 ++++e++ +++ d +g  +W++k+ + +++
  RcHm_v2.0_Chr2g0176341 122 FQKELKNSDVSTLRRVVLPKTTAKFGasfthgpndidlfninvgivfqkaaeahlpALESKEGISISMDDIDGlHVWSFKF-WpNNN 207
                             99*******************99555999999999999999999999998888888666668999********9*******.66999 PP

                             TTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                      B3  56 sgryvltkGWkeFvkangLkegDfvvFkl 84 
                             s++yvl+ ++ eFv+ +gL+ gDf++ + 
  RcHm_v2.0_Chr2g0176341 208 SRMYVLE-NTGEFVSTHGLQLGDFIMVYQ 235
                             999***9.*****************9983 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MMMDQTHAAL HSKTEAFALR AGVNEHGFLT RHDDQEVDNN NSNKKHDNNV NSFQGSDRPG  60
SIRDLVRAVS TSGVQRKKRM MRQRRATTIN FQLSFATPSS HVLPSTSPPA RVTDPARLRF  120
LFQKELKNSD VSTLRRVVLP KTTAKFGASF THGPNDIDLF NINVGIVFQK AAEAHLPALE  180
SKEGISISMD DIDGLHVWSF KFWPNNNSRM YVLENTGEFV STHGLQLGDF IMVYQDSANH  240
NYAKKANSVQ DNDEEDETVY GVEETMNNAV NELMIYDSLP DQANKSSSFY MPTMDHDHMQ  300
DVNAGMSFVY DTTAFSNDSL LDFLGGSMTN YSRSNGRLQE NFGSVENLSL DDFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-72B3 family protein