PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0172501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 321aa    MW: 36570 Da    PI: 9.2206
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0172501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.3e-16257303148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT++Ed ll+++v ++G + W+ I++ +  gR +kqc++rw+++l
  RcHm_v2.0_Chr2g0172501 257 KGQWTPQEDRLLIELVGRYGDKKWSQISKVLK-GRVGKQCRERWHNHL 303
                             799****************************9.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MDYREGSFSF LSTLLSGMKP EPHPENVDLN TRLFKPPSPN GDYKPNTLFE NLSHFENQDS  60
RGIDLNYSDQ YHQSSPLLGG NHFGGTTVEG SSSKPFCGVD LATIKGFNQP FDACYNQADN  120
PNLQSNNVNI FPYAPTAAVS FADSQKAVMH GGWGDYDDAP RHRYQDQHHH QMPDHHHHHQ  180
MAATQPLPEA TQATSCVQLP PLVNFQEFKS ATPRFMLPSA DEYYSRNITP KENELGKKKR  240
HYTKKASKDG REAMIIKGQW TPQEDRLLIE LVGRYGDKKW SQISKVLKGR VGKQCRERWH  300
NHLRPDIRVL KKCGAKKRIR S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.16e-28MYB family protein