PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0169671

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 366aa MW: 39847.8 Da PI: 6.8382

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0169671	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed +l+ +v ++G g+W+ ++++ g++R++k+c++rw +yl RcHm_v2.0_Chr2g0169671 14 RGLWTAAEDAKLLACVSKHGVGNWTVVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	50.1	6.2e-16	69	110	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eE+e +++++k G++ W++Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr2g0169671 69 TFTPEEEEHIINLHKAIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MGRPPCCDKS NVKRGLWTAA EDAKLLACVS KHGVGNWTVV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDTF TPEEEEHIIN LHKAIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLSKIG 120 IDPVTHKPIS QILSDYGNIT SLPKHIGNHF GPSFNKLNMS TTFVPVSDPS SGITGLAYTN 180 MMMMNPIMES QDYSSTSTLP FGFLSQFQAM NQDDNVSLPP HFSNEVTSSC SSSSSPPATD 240 LLSPQCHASA QVVTPSSSPF NWSEFLLHDP FSSADQPKQE EVFQGLLASP ANPTVGNGIQ 300 SQAFEVGSSS VINGGPSLNN NKNLANDQIA SSSSSSLSSF VDTILGQDSE MRAALFPELL 360 DGCFDY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MGRPPCCDKS NVKRGLWTAA EDAKLLACVS KHGVGNWTVV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHDTF TPEEEEHIIN LHKAIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLSKIG  120
IDPVTHKPIS QILSDYGNIT SLPKHIGNHF GPSFNKLNMS TTFVPVSDPS SGITGLAYTN  180
MMMMNPIMES QDYSSTSTLP FGFLSQFQAM NQDDNVSLPP HFSNEVTSSC SSSSSPPATD  240
LLSPQCHASA QVVTPSSSPF NWSEFLLHDP FSSADQPKQE EVFQGLLASP ANPTVGNGIQ  300
SQAFEVGSSS VINGGPSLNN NKNLANDQIA SSSSSSLSSF VDTILGQDSE MRAALFPELL  360
DGCFDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	4e-81	MYB family protein