PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0167771

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Dof

Protein Properties

Length: 509aa MW: 55193.1 Da PI: 6.0846

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0167771	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	150	209	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ RcHm_v2.0_Chr2g0167771 150 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNT 209 7899******************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MSEGRDPAIK LFGKTIPLTE VPPLLSESTV PAAEEVVAAP DPGSDADRVS SSSNSSSPGG 60 GGGEVNDNKD GEEEKEVNKD TLGEKAIQNK EGDEVLPLSS KELMNPDAAS RIGESPKAPV 120 DKETAALKTL KAEEEQSETS NSQEKTLKKP DKIIPCPRCN SMDTKFCYYN NYNVNQPRHF 180 CKNCQRYWTA GGTMRNVPVG AGRRKNKNTP SQYRHITVSE AHPNTRPDVH HPSVQSNGTV 240 LTFCSDTPLC ESMTSVLQLA DKNLQNRTPN GFHKSEGLVV PASYGGGVNG DDHSNRSTVT 300 DSNSKDETSK PGPQEQVMQN YPGFPPQIPC FPGAPWPYPW NPAQWSSPVS PPAFCPPGYP 360 MPFYPAAAYW GCAVQGTWNM PWLPQPSSPN QTAPSSGSNS PTLGKHSRDE NPLKQTSSEE 420 EETTKEKKAE RCLWIPKTLR IDDPGEAARS SIWATLGIKN DKADSISSGG LFKAFRSKGD 480 EKNHIAEASP VLQANPAALS RSLKFQESS

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MSEGRDPAIK LFGKTIPLTE VPPLLSESTV PAAEEVVAAP DPGSDADRVS SSSNSSSPGG  60
GGGEVNDNKD GEEEKEVNKD TLGEKAIQNK EGDEVLPLSS KELMNPDAAS RIGESPKAPV  120
DKETAALKTL KAEEEQSETS NSQEKTLKKP DKIIPCPRCN SMDTKFCYYN NYNVNQPRHF  180
CKNCQRYWTA GGTMRNVPVG AGRRKNKNTP SQYRHITVSE AHPNTRPDVH HPSVQSNGTV  240
LTFCSDTPLC ESMTSVLQLA DKNLQNRTPN GFHKSEGLVV PASYGGGVNG DDHSNRSTVT  300
DSNSKDETSK PGPQEQVMQN YPGFPPQIPC FPGAPWPYPW NPAQWSSPVS PPAFCPPGYP  360
MPFYPAAAYW GCAVQGTWNM PWLPQPSSPN QTAPSSGSNS PTLGKHSRDE NPLKQTSSEE  420
EETTKEKKAE RCLWIPKTLR IDDPGEAARS SIWATLGIKN DKADSISSGG LFKAFRSKGD  480
EKNHIAEASP VLQANPAALS RSLKFQESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	1e-103	Dof family protein