PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0167441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 375aa MW: 41047.4 Da PI: 6.6126

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0167441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl RcHm_v2.0_Chr2g0167441 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPIKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l RcHm_v2.0_Chr2g0167441 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PIKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLSTHDGQ SKNAANLSHM AQWESARLEA EARLVRESKL RSHNSLINQL 180 TSAAAAAAAA AASTSSSSAH QLLFMKGQSL ESPTSTLTTY NSENVVPGIM PSSMIEFVGC 240 SGASSGDHQD QTAAINAKEE GDVQVQDWKL GFGNVPSSST HFGLHDNVTW TSNNEQVHHD 300 RGIGSVDEVA DQEGFTNLLL NNSVDRDQSM SDGGGGDSEN GGSAGSDYYE DNKNYWNSIL 360 NLVNSSPSHD DSPIF

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PIKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLSTHDGQ SKNAANLSHM AQWESARLEA EARLVRESKL RSHNSLINQL  180
TSAAAAAAAA AASTSSSSAH QLLFMKGQSL ESPTSTLTTY NSENVVPGIM PSSMIEFVGC  240
SGASSGDHQD QTAAINAKEE GDVQVQDWKL GFGNVPSSST HFGLHDNVTW TSNNEQVHHD  300
RGIGSVDEVA DQEGFTNLLL NNSVDRDQSM SDGGGGDSEN GGSAGSDYYE DNKNYWNSIL  360
NLVNSSPSHD DSPIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-118	MYB family protein