PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0165281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 211aa    MW: 23638.2 Da    PI: 4.7936
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0165281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.92.7e-163090357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp++e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr2g0165281 30 NRWAPTPPQLRILKGLYYDkgFKYPTTEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 90
                            7****************96569*************************************97 PP
2Wus_type_Homeobox963.1e-312991364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P++e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr2g0165281 29 NNRWAPTPPQLRILKGLYYdKGFKYPTTEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 91
                            78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MEPRTLQLME QQTQQQIEDG GNNQAAGTNN RWAPTPPQLR ILKGLYYDKG FKYPTTEQIQ  60
EICLHLKQYG QIEDKNVFFW FQNLKARERQ KLKEFRNVRV GGSLDLNFGS TSSTDDGRSI  120
DLNFGSTGST STDRSIDLNF GLRVGYGVDG SIMEQRGEYH QEIETLPLFP MHGEDIFGNM  180
KTTSEGGSGY GGGSRISLEL SLNSYGDADM A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-22WOX family protein