PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0164091
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family CO-like
Protein Properties Length: 396aa    MW: 43672.5 Da    PI: 5.4226
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0164091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.43e-081858438
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                            r+C+++ + + + +C+ ++ +lC dC  ++H        H+
  RcHm_v2.0_Chr2g0164091 18 RVCDTCRSAPCTVYCRADSAYLCSDCDATIHAAnrvasrHE 58
                            79*****************************5556666676 PP
2zf-B_box29.51.6e-0960105342
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                              ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  RcHm_v2.0_Chr2g0164091  60 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 105
                             689*****************************66899999**9997 PP
3CCT70.35e-24327370144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  RcHm_v2.0_Chr2g0164091 327 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 370
                             9*****************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MLLKEESNGA AAANSWARVC DTCRSAPCTV YCRADSAYLC SDCDATIHAA NRVASRHERV  60
WVCEACERAP AAFLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG FLHGPTATDP  120
GRQIMVGAAP ADTTEDGFLS QEGDEAMDEE DEDEAASWLL LNPVKNSNGN HTSNNNPNNN  180
NNGFFFGVEV DEYLDFVEYN SSDQNQLSTT TASTDQHNQY GVPHKISYGG DSVVPVQYGE  240
GKVNQMQMQQ KHNFHQLGME YESSKAAYGY DGSISHTVSV SSMDVGVVPD STMSDMSISH  300
PRTPKGTIDL FNGPTIQMPT QLSPMDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP  360
RIKGRFAKRT DIEVEVDQMF STSLMGETGY GIVPSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-126CO-like family protein