PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0163191

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 363aa MW: 40558 Da PI: 9.5291

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0163191	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.4e-14	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m +R +k+c +rw +yl RcHm_v2.0_Chr2g0163191 4 RQRWQPEEDALLRAYVKQYGPKEWALVSQRMAqpINRDPKSCLERWKNYL 53 89******************************99**********97 PP
2	Myb_DNA-binding	35.8	1.9e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + RcHm_v2.0_Chr2g0163191 59 KGSLSPEEQSLVIQLQAKYGNK-WKKIAAELP-GRTPKRLGKWWEVF 103 57789***************.*****.***999999776 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MKERQRWQPE EDALLRAYVK QYGPKEWALV SQRMAQPINR DPKSCLERWK NYLRPGLKKG 60 SLSPEEQSLV IQLQAKYGNK WKKIAAELPG RTPKRLGKWW EVFREKQLKH KPGCSSAAAA 120 AGASQASTAA SSSSTQPPEG SIPVAAGISS PEKAAQGPYD HILETFAEKY VQPKLYGMMS 180 EPDPLLSLGS AAATPSVLPP WMNPPSATSS TSSTTPSPSV SLSLSPSDPG YDPDPTRVQM 240 GTLVQWCKEV EEGRQSWVQH KKEATWRLSR LEQQLESEKA RKRREAMEEI EAKIRALREE 300 EMAFMGRIES DYREQMSVLQ REAESKEAKL VEAWCSKHVK LAKLVDQIGG HGHNNHASHG 360 FTS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MKERQRWQPE EDALLRAYVK QYGPKEWALV SQRMAQPINR DPKSCLERWK NYLRPGLKKG  60
SLSPEEQSLV IQLQAKYGNK WKKIAAELPG RTPKRLGKWW EVFREKQLKH KPGCSSAAAA  120
AGASQASTAA SSSSTQPPEG SIPVAAGISS PEKAAQGPYD HILETFAEKY VQPKLYGMMS  180
EPDPLLSLGS AAATPSVLPP WMNPPSATSS TSSTTPSPSV SLSLSPSDPG YDPDPTRVQM  240
GTLVQWCKEV EEGRQSWVQH KKEATWRLSR LEQQLESEKA RKRREAMEEI EAKIRALREE  300
EMAFMGRIES DYREQMSVLQ REAESKEAKL VEAWCSKHVK LAKLVDQIGG HGHNNHASHG  360
FTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-56	MYB family protein