PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0162581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 351aa    MW: 40734.8 Da    PI: 8.7159
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0162581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.54.4e-132831190
                    FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                             F+vrk+ +++s r+g++t r++vCs eg+r e+  + +++ r +++ tr++C + +kv+  k ++ ++v +++++H+ +la
  RcHm_v2.0_Chr2g0162581  2 SFDVRKDDKRTSARTGRVTIRKWVCSVEGERLEKYMDnNNNVRMPKKLTRCHCPCLFKVRYFKeKNSYVVVDFKTDHSYDLA 83
                            6******************************99988745666779***************999899***********99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MSFDVRKDDK RTSARTGRVT IRKWVCSVEG ERLEKYMDNN NNVRMPKKLT RCHCPCLFKV  60
RYFKEKNSYV VVDFKTDHSY DLAQPQESHF LRSHRSVPNS HLALATSMRR LSIKTCHAYQ  120
YMADISGGFA NVGFKMKDLY NKLDSSQREI VLEGDAKATL AYLEGKAVED KKLFCKYSTD  180
ESNRLANLFW RDSTSLLNCC CFGDVLVFDS TYKTNHYGKP LVLFVGSNNH LLTTIFGFAL  240
LVDETVETYT CVLQMFLESM EGKKPLGILT DGDEAMRKAN ELVVPGCPHR LCTWHISKND  300
QKNLRNPEIV AEFRRCMFDE TTPCGFEQRW RAMVEKYGLH NRNWVKMMYD K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-52FAR1 family protein